By Greg Bensinger 

Before splitting in two, online marketplace eBay Inc. is selling off some old inventory.

EBay, which plans to spin off its PayPal payments unit next quarter, said on Friday it had sold to Craigslist Inc. for an undisclosed amount a 28.4% stake it had held in the online classified-ad site since 2004 and settled outstanding litigation.

The deal ends an occasionally contentious relationship between the two Web firms. In 2008, eBay sued Craigslist, alleging the San Francisco-based company had diluted its stake using a poison-pill plan, which cost eBay a board seat. Craigslist charged eBay had used its board seat to glean confidential information about its business, pointing to the firm's launch of competing classified-ad site Kijiji, which is now called eBay Classifieds in the U.S.

A Delaware Court of Chancery judge later ordered eBay's stake restored, though eBay didn't regain its board seat. In documents released during the dispute, Meg Whitman, then eBay's chief executive, had expressed a desire to buy all of Craigslist.

Terms of the deal weren't disclosed, and representatives for eBay and Craigslist declined to comment.

"EBay is now cleaning up, trying to stay focused on with their core business," said Gil Luria, a Wedbush Securities Inc. equity analyst. The sale is "unlikely to be material to eBay," he said.

Craigslist, with its free online merchandise listings, was once among the marquee e-commerce brands, but has been slow to keep pace with rivals such as eBay and Amazon.com Inc., particularly with the rise of smartphones. Though the company's site remains essential for apartment hunters, it has failed to meaningfully update its website and generally doesn't profit from the transactions it helps facilitate. Craig Newmark, who founded Craigslist in 1995, originally intended the site to be a non-profit, and he only implemented fees after watching others profit from the first tech boom. Mr. Newmark now oversees the CraigConnects philanthropic organization.

Craigslist once logged big sales from listing fees for an "Adult Services" section--shuttered in 2010--which attracted a mix of prostitutes, escorts and private masseuses. Today, the company charges for job listings, apartment-rental offerings and automobile ads in certain cities. Sales last year were estimated to be $335 million, double the year before, according to AIM Group, a classified advertising consultancy.

"There's probably a realization that Craigslist is never going to be what eBay wanted it to be 10 years ago," said Mr. Luria.

San Jose, Calif.-based eBay said that deal also resolves any outstanding litigation between the two companies.

"Love all, trust a few, do wrong to none," wrote Craigslist CEO Jim Buckmaster in a blog post on Friday, borrowing from William Shakespeare's comedy "All's Well That Ends Well."

Beyond selling its Craigslist stake, eBay is seeking to unload its eBay Enterprise unit, which helps other companies with their online sales efforts. It bought the division, then known as GSI Commerce for around $2.4 billion in 2011. It also expects to spin off its PayPal payments unit as a publicly traded company sometime in this year's third quarter, creating a stand-alone marketplace business.

Write to Greg Bensinger at greg.bensinger@wsj.com

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